PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000620.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 303aa    MW: 33554.8 Da    PI: 9.1497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000620.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-18108158256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Itr_sc000620.1_g00004.1 108 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 158
                              59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.11E-16107167No hitNo description
SMARTSM003806.3E-35108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.235108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-30108166IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22108166IPR016177DNA-binding domain
PRINTSPR003674.9E-10109120IPR001471AP2/ERF domain
PfamPF008471.2E-12109158IPR001471AP2/ERF domain
PRINTSPR003674.9E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MESIHGSNMP FVYGKNTEIR SSLSQLILNG GANTMDSIFS CCPEQNQTAA NHHNSASEPL  60
GSSVYLLHRD ILQKFCQENR VTTPALFTRA PAFNDALSAY MNPMKKKLYR GVRQRHWGKW  120
VAEIRLPQNR MRVWLGTYET AEAAAYAYDR AAYKLRGEYA RLNFPNLRDP TKLGFGDATK  180
LAELKKAVDA KIHAISQKVK RESKSKESKS KRRNSVNSAN SAQTVRIESP SSSPFAGNQM  240
WGNDAVSTSV SGEEMCNCNS KTSTSSDSGG IPAVPSIDSE FDDCGLARIP SFDLELIWEV  300
LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20107165160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20105165263ATERF1
3gcc_A2e-20105165263ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086732.13e-95PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W25e-67ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A067JN594e-95A0A067JN59_JATCU; Uncharacterized protein
STRINGPGSC0003DMT4000316855e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-55ERF family protein